PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 338aa    MW: 37824.7 Da    PI: 8.5764
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1550genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.71.3e-1719110286
     trihelix   2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt +e+++Liea++ ++er          rgk  + +W++v +++++rg+ rs++qC++kw+nl ++ykk++e +++ t++++ +   + ++e
  Gh_D06G1550  19 WTVSETMVLIEAKKMDDERRMkkswegegRGKPTELRWKWVEDYCWRRGCLRSQNQCNDKWDNLTRDYKKVREYQRR-TAGAEDNQGSYWEME 110
                  **************66666552222222246799*****************************************98.577777888888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8181183IPR017877Myb-like domain
PfamPF138371.4E-1218110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MADQGGNNIG MREYRKGNWT VSETMVLIEA KKMDDERRMK KSWEGEGRGK PTELRWKWVE  60
DYCWRRGCLR SQNQCNDKWD NLTRDYKKVR EYQRRTAGAE DNQGSYWEME KNERKEKNLP  120
TNMLRQIYEC LEEMVEKKGG QRVVLPATAT ASGSLPIPNI PDVMDRPIAS VQLPPILQHQ  180
LPPIPAAVPL PLTALPQLPL PAAAPTPLLQ PPFSYAQPLP TVDSDTSEYS DSLAKRRRRS  240
GGNGEGTSNG AATANNSNEA GAAISKSASI IAEAIQASEE NEERRHRDLV SLHERILKIE  300
ESKTEINKRG IDGLVDAINK LANSILAFAS HKNQSAPK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.25471e-100boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452807.10.0PREDICTED: uncharacterized protein LOC105774776
TrEMBLA0A0D2VBL50.0A0A0D2VBL5_G
STRINGPOPTR_0012s11820.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-60Trihelix family protein